number of cross overs per chromosome 1 - arabidopsis

Load libraries and the data

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Arabidopsis recombination landscape data is published in the following manuscript
http://www.nature.com/hdy/journal/v108/n4/full/hdy201195a.html.

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Supplemental information from above manuscript is downloaded and is in the following folder recombination_landscape

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box plot of number of cross overs in progeny of different parental crosses of arabidopsis

## No id variables; using all as measure variables

## Warning: Removed 893 rows containing non-finite values (stat_boxplot).

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fitting distribtuion to number of cross overs per chromosome

## Warning: package 'fitdistrplus' was built under R version 3.2.3

## Warning in sqrt(diag(varcovar)): NaNs produced

## Warning in sqrt(1/diag(V)): NaNs produced

## Warning in cov2cor(varcovar): diag(.) had 0 or NA entries; non-finite
## result is doubtful

## Warning in sqrt(diag(varcovar)): NaNs produced

## Warning in sqrt(1/diag(V)): NaNs produced

## Warning in cov2cor(varcovar): diag(.) had 0 or NA entries; non-finite
## result is doubtful

## Warning in sqrt(diag(varcovar)): NaNs produced

## Warning in sqrt(1/diag(V)): NaNs produced

## Warning in cov2cor(varcovar): diag(.) had 0 or NA entries; non-finite
## result is doubtful

## Warning in sqrt(diag(varcovar)): NaNs produced

## Warning in sqrt(1/diag(V)): NaNs produced

## Warning in cov2cor(varcovar): diag(.) had 0 or NA entries; non-finite
## result is doubtful

## Warning in sqrt(diag(varcovar)): NaNs produced

## Warning in sqrt(1/diag(V)): NaNs produced

## Warning in cov2cor(varcovar): diag(.) had 0 or NA entries; non-finite
## result is doubtful

## Warning in sqrt(diag(varcovar)): NaNs produced

## Warning in sqrt(1/diag(V)): NaNs produced

## Warning in cov2cor(varcovar): diag(.) had 0 or NA entries; non-finite
## result is doubtful

## Warning in sqrt(diag(varcovar)): NaNs produced

## Warning in sqrt(1/diag(V)): NaNs produced

## Warning in cov2cor(varcovar): diag(.) had 0 or NA entries; non-finite
## result is doubtful

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fitting distribtuion to number of cross overs per chromosome

##  chr     size num_plants   shape     rate   lambda    size       mu
##    1 30427671       6978 2.51999 1.469415       NA      NA       NA
##    1 30427671       6978      NA       NA 1.714961      NA       NA
##    1 30427671       6978      NA       NA       NA 6860232 1.714891

number of cross overs per chromosome 1 - arabidopsis

box plot of number of cross overs in progeny of different parental crosses of arabidopsis

fitting distribtuion to number of cross overs per chromosome

fitting distribtuion to number of cross overs per chromosome

qq plots using fitted distributions